35 publications
2022
- Kodera, S. M., Das, P., Gilbert, J. A., & Lutz, H. L. (2022). Conceptual strategies for characterizing interactions in microbial communities. Iscience, 25(2). doi: 10.1016/j.isci.2022.103775
2021
- Mirzayi, C., Renson, A., Zohra, F., Elsafoury, S., Geistlinger, L., Kasselman, L. J., ... Massive Anal Quality Control, S. (2021). Reporting guidelines for human microbiome research: the STORMS checklist. Nature Medicine, 27(11), 1885-1892. doi: 10.1038/s41591-021-01552-x
- Li, H. Y., Wang, H., Tao, X. H., Wang, X. Z., Jin, W. Z., Gilbert, J. A., ... Zhang, Z. J. (2021). Continental-scale paddy soil bacterial community structure, function, and biotic interaction. Msystems, 6(5), 14. doi: 10.1128/mSystems.01368-20
- Khan, R., Yee, A. L., Gilbert, J. A., Haider, A., Jamal, S. B., & Muhammad, F. (2021). Triclosan-containing sutures: safety and resistance issues need to be addressed prior to generalized use. Applied Nanoscience, 10. doi: 10.1007/s13204-021-01979-1
- Ni, Y. Y., Yang, T., Ma, Y. Y., Zhang, K. P., Soltis, P. S., Soltis, D. E., ... Chu, H. Y. (2021). Soil pH determines bacterial distribution and assembly processes in natural mountain forests of eastern China. Global Ecology and Biogeography, 14. doi: 10.1111/geb.13373
- Lutz, H. L., Gilbert, J. A., & Dick, C. W. (2021). Associations between Afrotropical bats, eukaryotic parasites, and microbial symbionts. Molecular Ecology. doi: 10.1111/mec.16044
- Grieneisen, L., Dasari, M., Gould, T. J., Bjork, J. R., Grenier, J., Yotova, V., ... Blekhman, R. (2021). Gut microbiome heritability is nearly universal but environmentally contingent. Science, 373(6551), 181-+. doi: 10.1126/science.aba5483
- Martin, A., Ecklu-Mensah, G., Ha, C. W. Y., Hendrick, G., Layman, D. K., Gilbert, J., & Devkota, S. (2021). Gut microbiota mediate the FGF21 adaptive stress response to chronic dietary protein-restriction in mice. Nature Communications, 12(1). doi: 10.1038/s41467-021-24074-z
- Marotz, C., Belda-Ferre, P., Ali, F., Das, P., Huang, S., Cantrell, K., ... Allard, S. M. (2021). SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment. Microbiome, 9(1), 15. doi: 10.1186/s40168-021-01083-0
- Swain, T. D., Lax, S., Gilbert, J., Backman, V., & Marcelino, L. A. (2021). A phylogeny-informed analysis of the global coral-Symbiodiniaceae interaction network reveals that traits correlated with thermal bleaching are specific to symbiont transmission mode. Msystems, 6(3). doi: 10.1128/mSystems.00266-21
- Yang, K. T., Hou, Y. Z., Zhang, Y., Liang, H., Sharma, A., Zheng, W. X., ... Weichselbaum, R. R. (2021). Suppression of local type I interferon by gut microbiota-derived butyrate impairs antitumor effects of ionizing radiation. Journal of Experimental Medicine, 218(3). doi: 10.1084/jem.20201915
- Minich, J. J., Ali, F., Marotz, C., Belda-Ferre, P., Chiang, L., Shaffer, J. P., ... Swafford, A. D. (2021). Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment. Microbiome, 9(1). doi: 10.1186/s40168-020-00960-4
2020
- Hopper, C. P., De La Cruz, L. K., Lyles, K. V., Wareham, L. K., Gilbert, J. A., Eichenbaum, Z., ... Wang, B. H. (2020). Role of carbon monoxide in host-gut microbiome communication. Chemical Reviews, 120(24), 13273-13311. doi: 10.1021/acs.chemrev.0c00586
- Lutz, H., Vangelatos, A., Gottel, N., Osculati, A., Visona, S., Finley, S. J., ... Javan, G. T. (2020). Effects of extended postmortem interval on microbial communities in organs of the human cadaver. Frontiers in Microbiology, 11(569630). doi: 10.3389/fmicb.2020.569630
- Salido, R. A., Morgan, S. C., Rojas, M. I., Magallanes, C. G., Marotz, C., DeHoff, P., ... Knight, R. (2020). Handwashing and detergent treatment greatly reduce SARS-CoV-2 viral load on Halloween candy handled by COVID-19 patients. Msystems, 5(6).
- Zarraonaindia, I., Martinez-Goni, X. S., Linero, O., Munoz-Colmenero, M., Aguirre, M., Abad, D., ... Estonba, A. (2020). Response of horticultural soil microbiota to different fertilization practices. Plants-Basel, 9(11). doi: 10.3390/plants9111501
- Hampton-Marcell, J. T., Larsen, P., Anton, T., Cralle, L., Sangwan, N., Lax, S., ... Gilbert, J. A. (2020). Detecting personal microbiota signatures at artificial crime scenes. Forensic Science International, 313(110351). doi: 10.1016/j.forsciint.2020.110351
- Xu, Y., Tandon, R., Ancheta, C., Arroyo, P., Gilbert, J. A., Stephens, B., & Kelley, S. T. (2020). Quantitative profiling of built environment bacterial and fungal communities reveals dynamic material dependent growth patterns and microbial interactions. Indoor Air. doi: 10.1111/ina.12727
- Ma, B., Wang, Y. L., Ye, S. D., Liu, S., Stirling, E., Gilbert, J. A., ... Xu, J. M. (2020). Earth microbial co-occurrence network reveals interconnection pattern across microbiomes. Microbiome, 8(1). doi: 10.1186/s40168-020-00857-2
- Coil, D. A., Neches, R. Y., Lang, J. M., Jospin, G., Brown, W. E., Cavalier, D., ... Eisen, J. A. (2020). Bacterial communities associated with cell phones and shoes. Peerj, 8(e9235). doi: 10.7717/peerj.9235
- Shojaee, S., Sharma, A., Gottel, N., Sanchez, T., Gilbert, J. A., & Rahman, N. M. (2020). Microbiome profile associated with malignant pleural effusion. Plos One, 15(5). doi: 10.1371/journal.pone.0232181
- Polster, S. P., Sharma, A., Tanes, C., Tang, A. T., Mericko, P., Cao, Y., ... Awad, I. A. (2020). Permissive microbiome characterizes human subjects with a neurovascular disease cavernous angioma. Nature Communications, 11(1). doi: 10.1038/s41467-020-16436-w
- Chen, L. W., Xu, J., Soh, S. E., Aris, I. M., Tint, M. T., Gluckman, P. D., ... Lee, Y. S. (2020). Implication of gut microbiota in the association between infant antibiotic exposure and childhood obesity and adiposity accumulation. International Journal of Obesity. doi: 10.1038/s41366-020-0572-0
- Qin, N., Liang, P., Wu, C. Y., Wang, G. Q., Xu, Q., Xiong, X., ... Zhu, T. F. (2020). Longitudinal survey of microbiome associated with particulate matter in a megacity. Genome Biology, 21(1). doi: 10.1186/s13059-020-01964-x
- Sharma, A., Das, P., Buschmann, M., & Gilbert, J. A. (2020). The future of microbiome-based therapeutics in clinical applications. Clinical Pharmacology & Therapeutics, 107(1), 123-128. doi: 10.1002/cpt.1677
- Song, S. J., Sanders, J. G., Delsuc, F., Metcalf, J., Amato, K., Taylor, M. W., ... Knight, R. (2020). Comparative analyses of vertebrate gut microbiomes reveal convergence between birds and bats. Mbio, 11(1). doi: 10.1128/mBio.02901-19
2019
- Luu, I., Sharma, A., Guaderrama, M., Peru, M., Nation, J., Page, N., ... Broderick, L. (2019). Immune dysregulation in the tonsillar microenvironment of Periodic Fever, Aphthous stomatitis, Pharyngitis, Adenitis (PFAPA) Syndrome. Journal of Clinical Immunology. doi: 10.1007/s10875-019-00724-2
- Sharma, A., Laxman, B., Naureckas, E. T., Hogarth, D. K., Sperling, A. I., Solway, J., ... White, S. R. (2019). Associations between fungal and bacterial microbiota of airways and asthma endotypes. Journal of Allergy and Clinical Immunology, 144(5), 1214-+. doi: 10.1016/j.jaci.2019.06.025
- Lutz, H. L., Jackson, E. W., Webala, P. W., Babyesiza, W. S., Peterhans, J. C. K., Demos, T. C., ... Gilbert, J. A. (2019). Ecology and host identity outweigh evolutionary history in shaping the bat microbiome. Msystems, 4(6). doi: 10.1128/mSystems.00511-19
- Jackrel, S. L., Gilbert, J. A., & Wootton, J. T. (2019). The origin, succession, and predicted metabolism of bacterial communities associated with leaf decomposition. Mbio, 10(5). doi: 10.1128/mBio.01703-19
- Sharma, A., Buschmann, M. M., & Gilbert, J. A. (2019). Pharmacomicrobiomics: The Holy Grail to Variability in Drug Response?. Clinical Pharmacology & Therapeutics, 106(2), 317-328. doi: 10.1002/cpt.1437
- Dodiya, H. B., Kuntz, T., Shaik, S. M., Baufeld, C., Leibowitz, J., Zhang, X. L., ... Sisodia, S. S. (2019). Sex-specific effects of microbiome perturbations on cerebral A beta amyloidosis and microglia phenotypes. Journal of Experimental Medicine, 216(7), 1542-1560. doi: 10.1084/jem.20182386
- Richardson, M., Gottel, N., Gilbert, J. A., Gordon, J., Gandhi, P., Reboulet, R., & Hampton-Marcell, J. T. (2019). Concurrent measurement of microbiome and allergens in the air of bedrooms of allergy disease patients in the Chicago area. Microbiome, 7(82). doi: 10.1186/s40168-019-0695-5
- Gilbert, J. A., & Lynch, S. V. (2019). Community ecology as a framework for human microbiome research. Nature Medicine, 25(6), 884-889. doi: 10.1038/s41591-019-0464-9
- Sharma, A., Richardson, M., Cralle, L., Stamper, C. E., Maestre, J. P., Stearns-Yoder, K. A., ... Hoisington, A. J. (2019). Longitudinal homogenization of the microbiome between both occupants and the built environment in a cohort of United States Air Force Cadets. Microbiome, 7(70). doi: 10.1186/s40168-019-0686-6