Publications

35 publications

2022

Kodera, S. M., Das, P., Gilbert, J. A., & Lutz, H. L. (2022). Conceptual strategies for characterizing interactions in microbial communities. Iscience, 25(2). doi: 10.1016/j.isci.2022.103775

2021

Mirzayi, C., Renson, A., Zohra, F., Elsafoury, S., Geistlinger, L., Kasselman, L. J., ... Massive Anal Quality Control, S. (2021). Reporting guidelines for human microbiome research: the STORMS checklist. Nature Medicine, 27(11), 1885-1892. doi: 10.1038/s41591-021-01552-x
Li, H. Y., Wang, H., Tao, X. H., Wang, X. Z., Jin, W. Z., Gilbert, J. A., ... Zhang, Z. J. (2021). Continental-scale paddy soil bacterial community structure, function, and biotic interaction. Msystems, 6(5), 14. doi: 10.1128/mSystems.01368-20
Khan, R., Yee, A. L., Gilbert, J. A., Haider, A., Jamal, S. B., & Muhammad, F. (2021). Triclosan-containing sutures: safety and resistance issues need to be addressed prior to generalized use. Applied Nanoscience, 10. doi: 10.1007/s13204-021-01979-1
Ni, Y. Y., Yang, T., Ma, Y. Y., Zhang, K. P., Soltis, P. S., Soltis, D. E., ... Chu, H. Y. (2021). Soil pH determines bacterial distribution and assembly processes in natural mountain forests of eastern China. Global Ecology and Biogeography, 14. doi: 10.1111/geb.13373
Lutz, H. L., Gilbert, J. A., & Dick, C. W. (2021). Associations between Afrotropical bats, eukaryotic parasites, and microbial symbionts. Molecular Ecology. doi: 10.1111/mec.16044
Grieneisen, L., Dasari, M., Gould, T. J., Bjork, J. R., Grenier, J., Yotova, V., ... Blekhman, R. (2021). Gut microbiome heritability is nearly universal but environmentally contingent. Science, 373(6551), 181-+. doi: 10.1126/science.aba5483
Martin, A., Ecklu-Mensah, G., Ha, C. W. Y., Hendrick, G., Layman, D. K., Gilbert, J., & Devkota, S. (2021). Gut microbiota mediate the FGF21 adaptive stress response to chronic dietary protein-restriction in mice. Nature Communications, 12(1). doi: 10.1038/s41467-021-24074-z
Marotz, C., Belda-Ferre, P., Ali, F., Das, P., Huang, S., Cantrell, K., ... Allard, S. M. (2021). SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment. Microbiome, 9(1), 15. doi: 10.1186/s40168-021-01083-0
Swain, T. D., Lax, S., Gilbert, J., Backman, V., & Marcelino, L. A. (2021). A phylogeny-informed analysis of the global coral-Symbiodiniaceae interaction network reveals that traits correlated with thermal bleaching are specific to symbiont transmission mode. Msystems, 6(3). doi: 10.1128/mSystems.00266-21
Yang, K. T., Hou, Y. Z., Zhang, Y., Liang, H., Sharma, A., Zheng, W. X., ... Weichselbaum, R. R. (2021). Suppression of local type I interferon by gut microbiota-derived butyrate impairs antitumor effects of ionizing radiation. Journal of Experimental Medicine, 218(3). doi: 10.1084/jem.20201915
Minich, J. J., Ali, F., Marotz, C., Belda-Ferre, P., Chiang, L., Shaffer, J. P., ... Swafford, A. D. (2021). Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment. Microbiome, 9(1). doi: 10.1186/s40168-020-00960-4

2020

Hopper, C. P., De La Cruz, L. K., Lyles, K. V., Wareham, L. K., Gilbert, J. A., Eichenbaum, Z., ... Wang, B. H. (2020). Role of carbon monoxide in host-gut microbiome communication. Chemical Reviews, 120(24), 13273-13311. doi: 10.1021/acs.chemrev.0c00586
Lutz, H., Vangelatos, A., Gottel, N., Osculati, A., Visona, S., Finley, S. J., ... Javan, G. T. (2020). Effects of extended postmortem interval on microbial communities in organs of the human cadaver. Frontiers in Microbiology, 11(569630). doi: 10.3389/fmicb.2020.569630
Salido, R. A., Morgan, S. C., Rojas, M. I., Magallanes, C. G., Marotz, C., DeHoff, P., ... Knight, R. (2020). Handwashing and detergent treatment greatly reduce SARS-CoV-2 viral load on Halloween candy handled by COVID-19 patients. Msystems, 5(6).
Zarraonaindia, I., Martinez-Goni, X. S., Linero, O., Munoz-Colmenero, M., Aguirre, M., Abad, D., ... Estonba, A. (2020). Response of horticultural soil microbiota to different fertilization practices. Plants-Basel, 9(11). doi: 10.3390/plants9111501
Hampton-Marcell, J. T., Larsen, P., Anton, T., Cralle, L., Sangwan, N., Lax, S., ... Gilbert, J. A. (2020). Detecting personal microbiota signatures at artificial crime scenes. Forensic Science International, 313(110351). doi: 10.1016/j.forsciint.2020.110351
Xu, Y., Tandon, R., Ancheta, C., Arroyo, P., Gilbert, J. A., Stephens, B., & Kelley, S. T. (2020). Quantitative profiling of built environment bacterial and fungal communities reveals dynamic material dependent growth patterns and microbial interactions. Indoor Air. doi: 10.1111/ina.12727
Ma, B., Wang, Y. L., Ye, S. D., Liu, S., Stirling, E., Gilbert, J. A., ... Xu, J. M. (2020). Earth microbial co-occurrence network reveals interconnection pattern across microbiomes. Microbiome, 8(1). doi: 10.1186/s40168-020-00857-2
Coil, D. A., Neches, R. Y., Lang, J. M., Jospin, G., Brown, W. E., Cavalier, D., ... Eisen, J. A. (2020). Bacterial communities associated with cell phones and shoes. Peerj, 8(e9235). doi: 10.7717/peerj.9235
Shojaee, S., Sharma, A., Gottel, N., Sanchez, T., Gilbert, J. A., & Rahman, N. M. (2020). Microbiome profile associated with malignant pleural effusion. Plos One, 15(5). doi: 10.1371/journal.pone.0232181
Polster, S. P., Sharma, A., Tanes, C., Tang, A. T., Mericko, P., Cao, Y., ... Awad, I. A. (2020). Permissive microbiome characterizes human subjects with a neurovascular disease cavernous angioma. Nature Communications, 11(1). doi: 10.1038/s41467-020-16436-w
Chen, L. W., Xu, J., Soh, S. E., Aris, I. M., Tint, M. T., Gluckman, P. D., ... Lee, Y. S. (2020). Implication of gut microbiota in the association between infant antibiotic exposure and childhood obesity and adiposity accumulation. International Journal of Obesity. doi: 10.1038/s41366-020-0572-0
Qin, N., Liang, P., Wu, C. Y., Wang, G. Q., Xu, Q., Xiong, X., ... Zhu, T. F. (2020). Longitudinal survey of microbiome associated with particulate matter in a megacity. Genome Biology, 21(1). doi: 10.1186/s13059-020-01964-x
Sharma, A., Das, P., Buschmann, M., & Gilbert, J. A. (2020). The future of microbiome-based therapeutics in clinical applications. Clinical Pharmacology & Therapeutics, 107(1), 123-128. doi: 10.1002/cpt.1677
Song, S. J., Sanders, J. G., Delsuc, F., Metcalf, J., Amato, K., Taylor, M. W., ... Knight, R. (2020). Comparative analyses of vertebrate gut microbiomes reveal convergence between birds and bats. Mbio, 11(1). doi: 10.1128/mBio.02901-19

2019

Luu, I., Sharma, A., Guaderrama, M., Peru, M., Nation, J., Page, N., ... Broderick, L. (2019). Immune dysregulation in the tonsillar microenvironment of Periodic Fever, Aphthous stomatitis, Pharyngitis, Adenitis (PFAPA) Syndrome. Journal of Clinical Immunology. doi: 10.1007/s10875-019-00724-2
Sharma, A., Laxman, B., Naureckas, E. T., Hogarth, D. K., Sperling, A. I., Solway, J., ... White, S. R. (2019). Associations between fungal and bacterial microbiota of airways and asthma endotypes. Journal of Allergy and Clinical Immunology, 144(5), 1214-+. doi: 10.1016/j.jaci.2019.06.025
Lutz, H. L., Jackson, E. W., Webala, P. W., Babyesiza, W. S., Peterhans, J. C. K., Demos, T. C., ... Gilbert, J. A. (2019). Ecology and host identity outweigh evolutionary history in shaping the bat microbiome. Msystems, 4(6). doi: 10.1128/mSystems.00511-19
Jackrel, S. L., Gilbert, J. A., & Wootton, J. T. (2019). The origin, succession, and predicted metabolism of bacterial communities associated with leaf decomposition. Mbio, 10(5). doi: 10.1128/mBio.01703-19
Sharma, A., Buschmann, M. M., & Gilbert, J. A. (2019). Pharmacomicrobiomics: The Holy Grail to Variability in Drug Response?. Clinical Pharmacology & Therapeutics, 106(2), 317-328. doi: 10.1002/cpt.1437
Dodiya, H. B., Kuntz, T., Shaik, S. M., Baufeld, C., Leibowitz, J., Zhang, X. L., ... Sisodia, S. S. (2019). Sex-specific effects of microbiome perturbations on cerebral A beta amyloidosis and microglia phenotypes. Journal of Experimental Medicine, 216(7), 1542-1560. doi: 10.1084/jem.20182386
Richardson, M., Gottel, N., Gilbert, J. A., Gordon, J., Gandhi, P., Reboulet, R., & Hampton-Marcell, J. T. (2019). Concurrent measurement of microbiome and allergens in the air of bedrooms of allergy disease patients in the Chicago area. Microbiome, 7(82). doi: 10.1186/s40168-019-0695-5
Gilbert, J. A., & Lynch, S. V. (2019). Community ecology as a framework for human microbiome research. Nature Medicine, 25(6), 884-889. doi: 10.1038/s41591-019-0464-9
Sharma, A., Richardson, M., Cralle, L., Stamper, C. E., Maestre, J. P., Stearns-Yoder, K. A., ... Hoisington, A. J. (2019). Longitudinal homogenization of the microbiome between both occupants and the built environment in a cohort of United States Air Force Cadets. Microbiome, 7(70). doi: 10.1186/s40168-019-0686-6